An illustrative non-technical review was published on Towards Data Science regarding our recent Journal paper “Automatic crack classification and segmentation on masonry surfaces using convolutional neural networks and transfer learning”.While new technologies have changed almost every aspect of our lives, the construction field seems to be struggling to catch up. Currently, the structural condition of a building is still predominantly manually inspected. In simple terms, even nowadays when a structure needs to be inspected for any damage, an engineer will manually check all the surfaces and take a bunch of photos while keeping notes of the position of any cracks. Then a few more hours need to be spent at the office to sort all the photos and notes trying to make a meaningful report out of it. Apparently this a laborious, costly, and subjective process. On top of that, safety concerns arise since there are parts of structures with access restrictions and difficult to reach. To give you an example, the Golden Gate Bridge needs to be periodically inspected. In other words, up to very recently there would be specially trained people who would climb across this picturesque structure and check every inch of it.
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BACKGROUND: Our previously published CUDA-only application PaSWAS for Smith-Waterman (SW) sequence alignment of any type of sequence on NVIDIA-based GPUs is platform-specific and therefore adopted less than could be. The OpenCL language is supported more widely and allows use on a variety of hardware platforms. Moreover, there is a need to promote the adoption of parallel computing in bioinformatics by making its use and extension more simple through more and better application of high-level languages commonly used in bioinformatics, such as Python.RESULTS: The novel application pyPaSWAS presents the parallel SW sequence alignment code fully packed in Python. It is a generic SW implementation running on several hardware platforms with multi-core systems and/or GPUs that provides accurate sequence alignments that also can be inspected for alignment details. Additionally, pyPaSWAS support the affine gap penalty. Python libraries are used for automated system configuration, I/O and logging. This way, the Python environment will stimulate further extension and use of pyPaSWAS.CONCLUSIONS: pyPaSWAS presents an easy Python-based environment for accurate and retrievable parallel SW sequence alignments on GPUs and multi-core systems. The strategy of integrating Python with high-performance parallel compute languages to create a developer- and user-friendly environment should be considered for other computationally intensive bioinformatics algorithms.
Electrohydrodynamic Atomization (EHDA), also known as Electrospray (ES), is a technology which uses strong electric fields to manipulate liquid atomization. Among many other areas, electrospray is used as an important tool for biomedical application (droplet encapsulation), water technology (thermal desalination and metal recovery) and material sciences (nanofibers and nano spheres fabrication, metal recovery, selective membranes and batteries). A complete review about the particularities of this tool and its application was recently published (2018), as an especial edition of the Journal of Aerosol Sciences. One of the main known bottlenecks of this technique, it is the fact that the necessary strong electric fields create a risk for electric discharges. Such discharges destabilize the process but can also be an explosion risk depending on the application. The goal of this project is to develop a reliable tool to prevent discharges in electrospray applications.
